QIAGEN OmicSoft and Biomedical Knowledge Base

Delving into public single-cell RNA-seq data using QIAGEN OmicSoft and Ingenuity Pathway Analysis (IPA)

128 views
July 28, 2023
Single-cell RNA-sequencing (scRNA-seq) is widely used to study tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, develop targeted therapies (including immunotherapy) and more. Accordingly, scientists have deposited a tremendous amount of scRNA-seq data into public domains like GEO.

In this training, you will learn how to:

· Locate public single-cell studies of interest to you using QIAGEN Omicsoft Single Cell Lands

· Study different cell types by dimension reduction plots (for example, t-SNE, UMAP)

· Investigate expression of genes of interest across different cell types (Violin plots, overlay expression on cluster)

· Identify key pathways and regulators from scRNA-seq data using QIAGEN IPA

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