QIAGEN OmicSoft and Biomedical Knowledge Base

Integrating deeply curated omics data with APIs for biomarkers and drug-target investigation

September 19, 2023
If you’re a data scientist or bioinformatician working in biopharma and need extensive high-quality ‘omics data for your projects in target discovery, this training is for you. You’ll learn how to programmatically discover, retrieve, filter, aggregate and analyze ‘omics data from our extensive repositories of deeply-curated multi-omics data. You’ll learn how to leverage extensive metadata to find and combine datasets of interest, find and test signatures and perform custom analyses to reveal patterns relevant to disease.
Join us to learn how QIAGEN OmicSoft Lands API can revolutionize your data analysis workflows and help you make more informed decisions.

In this training, you’ll learn how to:
• Search for gene signatures to find datasets (e.g., gene set analysis to find matches of various related comparisons, where the result is a list of comparisons with Contrast names)
• Plot correlation of results (e.g., where the result is a scatter plot between dataset comparisons)
• Find multiple datasets with the same metadata (e.g., based on comparisons, you can define key metadata, then pull a bunch of datasets, and the result is a large table)
• Perform a meta-analysis (e.g., based on datasets, do a Wilcoxon non-parametric test, where the result is Volcano plot and list)
• Test cell specificity with custom aggregation (e.g., for hundreds of genes, calculate the % expressing, and aggregate across studies and by CellTypeGroup, where the result is a heatmap)

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