QIAGEN IPA

Proteomics and phosphoproteomics data interpretation using QIAGEN Ingenuity Pathway Analysis

1,011 views
May 02, 2023
In this QIAGEN IPA training, we’ll focus on interpreting proteomics and phosphoproteomics datasets.

In this tutorial, we’ll guide you through steps and workflows to address your questions related to interpreting proteomics and phosphoproteomics datasets using QIAGEN IPA, such as:
• How should I format the data before uploading to IPA?
• How do I set up the analysis?
• Which upstream kinases are implicated in the observed phosphoproteomics changes?
• What are the targets of a particular upstream kinase and how do their levels of phosphorylation change over the time course?
• What are the targets on a particular Canonical Pathway and how do their levels of phosphorylation change over time?
• Which biological predictions trend in a time-dependent manner during the time course?
• How do the biological predictions from phosphoproteomics compare with a related transcriptomics dataset?

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