QIAGEN OmicSoft and Biomedical Knowledge Base
Investigating public scRNA data using OmicSoft and QIAGEN IPA
149 views
Single cell RNA-sequencing (scRNA-seq) has been widely used to investigate tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, development of targeted therapy (including immunotherapy) and more. Accordingly tremendous amount of scRNA-seq data has been deposited to public domains like GEO.
In this training, attendees will learn how to
· Locate public single cell studies of their interest using Omicsoft Single Cell Lands
· Study different cell types by dimension reduction plots (example t-SNE, UMAP)
· Investigate expression of genes of interest across different cell types (Violin plots, overlay expression on cluster)
· Identify key pathways and regulators from scRNA-seq data using Ingenuity Pathway Analysis
Related videos
QIAGEN OmicSoft and Biomedical Knowledge Base
QIAGEN OmicSoft Expression Analysis Training
In this 90-minute training, attendees will learn how to use basic expression...
QIAGEN OmicSoft and Biomedical Knowledge Base
Discoveries from public immuno-oncology studies using Omicsoft and Ingenuity Pathway Analysis
This training will focus on how QIAGEN Omicsoft Studio and Ingenuity Pathway...
QIAGEN OmicSoft and Biomedical Knowledge Base
Drug treatment, toxicology and target safety assessment using QIAGEN IPA and OmicSoft
In this 90-minute training, you’ll learn how to do drug treatment, toxicology...