QIAGEN CLC Genomics

RNA-seq and single-cell RNA-seq data analysis

217 views
May 09, 2022
In this 90-minute training, users will learn how to easily analyze RNA-seq and single-cell RNA-seq (scRNA-seq) data using QIAGEN CLC Genomics Workbench software.

For RNA-seq and scRNA-seq data, users will learn how to:
• Import fastq files, cell matrix files and metadata and how to download references
• Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee plots, etc.
• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, t-SNE plots, UMAP plots, dot plots, Venn diagrams and others
• Annotate single-cell clusters overlain with gene expression
• Easily customize RNA-seq and scRNA-seq workflows
• Export publication-quality graphics, tables and reports
• Send differential expression table to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench

Related videos

QIAGEN CLC Genomics

Metatranscriptome analysis, annotation and pathways investigations using CLC Genomics Workbench

96 views September 15, 2022

Using CLC Genomics Workbench, we will go through a pipeline for analyzing...

QIAGEN CLC Genomics

De novo assembly, BLAST and genome finishing using QIAGEN CLC Genomics Workbench

116 views September 01, 2022

This webinar will introduce users to the tools available for short reads...

QIAGEN CLC Genomics

RNA-seq data analysis and interpretation with QIAGEN CLC Genomics Workbench and Ingenuity Pathway...

185 views August 02, 2022

In this 90-minute training, users will learn how to easily analyze and...

QIAGEN CLC Genomics

Single-cell RNA-seq data analysis and Interpretation

263 views July 07, 2022

Slides from this training:...