QIAGEN CLC Genomics
Single-cell RNA-seq analysis made easy - February 24
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Reference: Skelly, Daniel A., et al. (2018) Single-cell transcriptional profiling reveals cellular diversity and intercommunication in the mouse heart. Cell reports 22.3: 600-610.
Topics covered:
• Introduction to the QIAGEN CLC Genomics Workbench
• Generation of t-SNE and UMAP plots, starting from raw FASTQ read files
• Automated annotation of cell types using QIAGEN’s cell type classifier
• Detection of differentially expressed genes in different cell types in a case vs. control setting
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