QIAGEN CLC Genomics

De novo assembly, BLAST and genome finishing using QIAGEN CLC Genomics Workbench

1,872 views
June 27, 2023
This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and genome finishing.

Participants will learn the following:

o Download and install needed plugins.

o Import data required for the analysis.

o Run the de novo assembly workflow.

o For long reads, improve a de novo assembly by polishing with short, high-quality reads.

o Map reads to a reference and visualize an assembly.

o For long reads, correct raw long reads for further analysis.

o Use BLAST to investigate the contigs.

o Analyze and assemble contigs through Genome Finishing tools.

Related videos

QIAGEN CLC Genomics

Long-read sequencing analysis in the QIAGEN CLC Genomics Workbench

1,726 views March 21, 2022

This tutorial is an introduction to working with the tools in the Long Read...

QIAGEN CLC Genomics

16S/18S/ITS sequencing analysis using CLC Genomics Workbench

1,607 views January 25, 2023

QIAGEN CLC Microbial Genomics Module provides tools and workflows for a broad...

QIAGEN CLC Genomics

RNA-seq data analysis and interpretation using QIAGEN CLC and QIAGEN IPA

1,081 views October 18, 2023

This 120-minute training will teach you how to easily analyze and interpret...

QIAGEN CLC Genomics

Exploring RNA-seq data using the CLC Genomics Workbench: Expression Analysis and upload to...

860 views February 15, 2024

In this webinar, we will present how to analyze RNA-seq data starting from...