QIAGEN CLC Genomics
De novo assembly, BLAST and genome finishing using QIAGEN CLC Genomics Workbench
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Participants will learn the following:
o Download and install needed plugins.
o Import data required for the analysis.
o Run the de novo assembly workflow.
o For long reads, improve a de novo assembly by polishing with short, high-quality reads.
o Map reads to a reference and visualize an assembly.
o For long reads, correct raw long reads for further analysis.
o Use BLAST to investigate the contigs.
o Analyze and assemble contigs through Genome Finishing tools.
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