For RNA-seq data, you will learn how to:

• Import FASTQ files, cell matrix files and metadata and how to download references

• Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee plots, etc.

• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, sankey plot and others

• Easily customize RNA-seq workflows • Export publication-quality graphics, tables and reports

Per audience request

• Send differential expression tables to QIAGEN Ingenuity Pathway Analysis directly from QIAGEN CLC Genomics Workbench to analyze and interpret relevant pathways