Multi-locus sequence typing (MLST) using QIAGEN CLC Genomics Workbench

October 12, 2022
QIAGEN CLC Genomics Workbench Premium provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization through SNP and K-mer trees using NGS data and antimicrobial resistance characterization. QIAGEN CLC Genomics Workbench Premium is widely used for analyses of bacterial, viral and eukaryotic (fungal) genomes and metagenomes. Topics covered in this webinar include:

• Overview of different tools within QIAGEN CLC Microbial Genomics Module application and research areas supported
• Focused review of isolate typing and characterization Importing data
• Utilization of metadata
• Downloading and managing references
• Database of isolates/ resistances/ MLST
• Walk through of ‘Type a Known Species’ workflow
• Review details for each isolate Creating SNP profiles to a specific reference
• Generate a SNP tree for isolate comparison
• Export tabular and high-quality graphical outputs in a wide range of file formats

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