QIAGEN CLC Genomics

Isolate typing, strain identification and antimicrobial resistance analyses using QIAGEN CLC Genomics Workbench - Aug 25 2021

468 views
August 26, 2021
QIAGEN CLC Genomics Workbench is widely used to analyze bacterial, viral and eukaryotic (fungal) genomes and metagenomes. It provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, antimicrobial resistance characterization and isolate characterization through SNP and K-mer trees using NGS data.

Topics covered in this 90-minute webinar include:
• An overview of the different tools within QIAGEN CLC Microbial Genomics Module and the research areas supported
• A focused review of isolate typing and characterization, including:
o Importing data
o Utilization of metadata
o Downloading and managing references
• Database of isolates/ resistances/ multi-locus sequence typing (MLST) analysis
o A walk-through of the ‘Type a Known Species’ workflow
- Review details for each isolate
o Creating SNP profiles to a specific reference
o Generate a SNP tree for isolate comparison
o Export tabular and high-quality graphical outputs in a wide range of file formats

Speaker: Shawn Prince, Ph.D., Field Application Scientist, QIAGEN Digital insights

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