QIAGEN CLC Genomics

Bioinformatics analysis of Nanopore sequencing data for SARS-CoV-2

2,054 views
May 01, 2020

The study of the COVID-19 pandemic often involves sequencing the SARS-CoV-2 virus using Illumina, Nanopore, IonTorrent and Sanger technologies alone or in combination. Depending on the sampling and library preparation method used, this can involve metatranscriptomic data of varying viral content.

 In this webinar tutorial, you will learn about:

 · Best practices for bioinformatic analyses using the versatile QIAGEN CLC Genomics Workbench

·  QC, adapter trimming and strategies for host read depletion and viral content enrichment

·  Simple pipelines for assembly and strain identification

·  A demonstration of read mapping, variant calling and consensus sequence extraction, which are necessary steps for obtaining high-quality genomic sequences for phylogenetic analysis and publication

Interested in learning more?

Click here

Speaker: Leif Schauser, Ph.D. Director, Product Management, Genome Analysis, QIAGEN


Related videos

QIAGEN CLC Genomics

QIAGEN CLC Main Workbench training

6,130 views December 21, 2020

Day 1: QIAGEN CLC Main Workbench Speaker: Shawn Prince, Sr. Field...

QIAGEN CLC Genomics

Biologically interpret your RNA-seq data with knowledge-based IPA

5,519 views September 22, 2017

This webinar will provide an overview of how to analyze data obtained from...

Discovery and Research

Exploring IPA’s Analysis Match: An Overview

5,359 views November 07, 2018

Learn about the new Analysis Match features and discover a new way to explore...