QIAGEN OmicSoft and Biomedical Knowledge Base
Public single-cell RNA-seq data investigation using QIAGEN OmicSoft and Ingenuity Pathway Analysis
70 views
Single-cell RNA-sequencing (scRNA-seq) is widely used to investigate tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, develop targeted therapy (including immunotherapy) and more. Accordingly, a tremendous amount of scRNA-seq data has been deposited to public domains like GEO.
In this training, you will learn how to
· Locate public single-cell studies of interest using QIAGEN Omicsoft Single Cell Lands
· Study different cell types by dimension reduction plots (for example, t-SNE, UMAP)
· Investigate expression of genes of interest across different cell types (Violin plots, overlay expression on cluster)
· Identify key pathways and regulators from scRNA-seq data using QIAGEN Ingenuity Pathway Analysis (IPA)
Related videos
QIAGEN OmicSoft and Biomedical Knowledge Base
Exploring pan-cancer immunomodulators for biomarker discovery and validation using TCGA and...
Cancer outcome is influenced by both the tumor microenvironment and host...
QIAGEN OmicSoft and Biomedical Knowledge Base
Investigating public scRNA data using OmicSoft and QIAGEN IPA
Single cell RNA-sequencing (scRNA-seq) has been widely used to investigate...
QIAGEN OmicSoft and Biomedical Knowledge Base
Checkpoint inhibitors investigation in context of biomarkers, drug targets and pathways using...
This training will focus on how QIAGEN Omicsoft Studio and IPA can be used to...