Isolate typing, strain identification and antimicrobial resistance analyses using QIAGEN CLC Genomics Workbench - Aug 25 2021

August 26, 2021
QIAGEN CLC Genomics Workbench is widely used to analyze bacterial, viral and eukaryotic (fungal) genomes and metagenomes. It provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, antimicrobial resistance characterization and isolate characterization through SNP and K-mer trees using NGS data.

Topics covered in this 90-minute webinar include:
• An overview of the different tools within QIAGEN CLC Microbial Genomics Module and the research areas supported
• A focused review of isolate typing and characterization, including:
o Importing data
o Utilization of metadata
o Downloading and managing references
• Database of isolates/ resistances/ multi-locus sequence typing (MLST) analysis
o A walk-through of the ‘Type a Known Species’ workflow
- Review details for each isolate
o Creating SNP profiles to a specific reference
o Generate a SNP tree for isolate comparison
o Export tabular and high-quality graphical outputs in a wide range of file formats

Speaker: Shawn Prince, Ph.D., Field Application Scientist, QIAGEN Digital insights

Related videos


QIAGEN CLC version 21 Microbial Genomics Module and Long Reads Support overview (January 27 2021)

522 views January 30, 2021

In this video Patrick Ettenhuber, Product Owner, QIAGEN Digital Insights,...

Discovery and Research

Bacterial strain typing and genomics characterization of multi-drug resistance with QIAGEN CLC...

378 views May 12, 2020

In this live webinar, we will present this tool and its utility for bacterial...


DNA methylation data analysis and interpretation using QIAGEN CLC Genomics Workbench and QIAGEN...

24 views October 15, 2021

In this 90-minute training, attendees will learn how to analyze and interpret...


QIAGEN CLC Genomics Workbench educational teaching license package - June 24 2021

160 views June 24, 2021

In this 60-minute webinar, we will introduce QIAGEN CLC Genomics Workbench...