tv.qiagenbioinformatics.com marketingbiox@qiagen.com https://tv.qiagenbioinformatics.com Watch tutorials, interviews and much more on our web based TV channel! en-us Visualplatform http://blogs.law.harvard.edu/tech/rss tv.qiagenbioinformatics.com CLC bio TV Watch tutorials, interviews and much more on our web based TV channel! clc bio tv, bioinformatics, genomics, research episodic no https://tv.qiagenbioinformatics.com/files/rv0.0/sitelogo.gif https://tv.qiagenbioinformatics.com http://tv.qiagenbioinformatics.com/photo/101491433/streamline-h5n1-and-other-microbial <p>In this training, you will learn how to analyze viral samples using QIAGEN CLC Genomics Workbench. This webinar will focus on bioinformatics workflows and data interpretation using H5N1 as an example, but similar analysis can be done with other viral and microbial (bacteria, fungus and more) samples. <p>Using viral samples, you will learn how to:</p> <p>• Utilize molecular biology tools such as primer design, cloning, alignment and tree construction and Sanger sequencing analysis<br> • Profile the virus present in a sample and automatically generate read mappings, detect variants, annotate consensus sequences, BLAST annotated consensus sequence genes and build phylogenetic trees for top hits and their close relatives<br> • Microbial genomics analysis including OTU clustering, taxonomic profiling and functional analysis<br> • Additional topics of interest based on registration feedback</p> <p>QIAGEN CLC Genomics Workbench is a user-friendly bioinformatics software solutions for genomics, transcriptomics, epigenomics and metagenomics analysis in one program.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/101491433/streamline-h5n1-and-other-microbial"><img src="http://tv.qiagenbioinformatics.com/64968571/101491433/85867c19de4f02ab975800113a6db58f/standard/download-11-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/101491433 Thu, 23 May 2024 15:17:00 GMT Streamline H5N1 and other microbial samples with CLC Genomics Workbench In this training, you will learn how to analyze viral samples using QIAGEN CLC Genomics Workbench. This webinar will focus on bioinformatics workflows and data interpretation using H5N1 as an example, but similar analysis can be done with other viral and microbial (bacteria, fungus and more) samples. Using viral samples, you will learn how to: • Utilize molecular biology tools such as primer design, cloning, alignment and tree construction and Sanger sequencing analysis • Profile the virus present in a sample and automatically generate read mappings, detect variants, annotate consensus sequences, BLAST annotated consensus sequence genes and build phylogenetic trees for top hits and their close relatives • Microbial genomics analysis including OTU clustering, taxonomic profiling and functional analysis • Additional topics of interest based on registration feedback QIAGEN CLC Genomics Workbench is a user-friendly bioinformatics software solutions for genomics, transcriptomics, epigenomics and metagenomics analysis in one program. In this training, you will learn how to analyze viral samples using QIAGEN CLC Genomics Workbench. This webinar will focus on bioinformatics workflows and data interpretation using H5N1 as an example, but similar analysis can be done with other... tv.qiagenbioinformatics.com 57:10 <p>In this training, you will learn how to analyze viral samples using QIAGEN CLC Genomics Workbench. This webinar will focus on bioinformatics workflows and data interpretation using H5N1 as an example, but similar analysis can be done with other viral and microbial (bacteria, fungus and more) samples. <p>Using viral samples, you will learn how to:</p> <p>• Utilize molecular biology tools such as primer design, cloning, alignment and tree construction and Sanger sequencing analysis<br> • Profile the virus present in a sample and automatically generate read mappings, detect variants, annotate consensus sequences, BLAST annotated consensus sequence genes and build phylogenetic trees for top hits and their close relatives<br> • Microbial genomics analysis including OTU clustering, taxonomic profiling and functional analysis<br> • Additional topics of interest based on registration feedback</p> <p>QIAGEN CLC Genomics Workbench is a user-friendly bioinformatics software solutions for genomics, transcriptomics, epigenomics and metagenomics analysis in one program.</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/101491433/streamline-h5n1-and-other-microbial"><img src="http://tv.qiagenbioinformatics.com/64968571/101491433/85867c19de4f02ab975800113a6db58f/standard/download-11-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench microbial http://tv.qiagenbioinformatics.com/photo/88628295/metagenomics-and-taxonomic <p>When it comes to taxonomic profiling of the microbiome, amplicon sequence variants (ASVs) is a method that has unique benefits compared to the traditional method of sequence similarity-based operational taxonomic unit (OTU) clustering. This training’ll cover how to effectively do taxonomic profiling using QIAGEN CLC Genomics Workbench’s ASV tools and a customizable workflow.<p></p> <p>Specifically, you’ll learn how to:<br> 1. Collect and bin sequence variants for each sample<br> 2. Merge AVS tables to compare profiles<br> 3. Assign the taxonomic profile/organism<br> 4. Export high-resolution graphical and comprehensive tabular results</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/88628295/metagenomics-and-taxonomic"><img src="http://tv.qiagenbioinformatics.com/64968575/88628295/d3fc0560880804b35be0c63cfd1ca5d3/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/88628295 Thu, 14 Sep 2023 19:22:11 GMT Metagenomics and taxonomic profiling using amplicon sequence variants (ASVs) When it comes to taxonomic profiling of the microbiome, amplicon sequence variants (ASVs) is a method that has unique benefits compared to the traditional method of sequence similarity-based operational taxonomic unit (OTU) clustering. This training’ll cover how to effectively do taxonomic profiling using QIAGEN CLC Genomics Workbench’s ASV tools and a customizable workflow. Specifically, you’ll learn how to: 1. Collect and bin sequence variants for each sample 2. Merge AVS tables to compare profiles 3. Assign the taxonomic profile/organism 4. Export high-resolution graphical and comprehensive tabular results When it comes to taxonomic profiling of the microbiome, amplicon sequence variants (ASVs) is a method that has unique benefits compared to the traditional method of sequence similarity-based operational taxonomic unit (OTU) clustering. This... tv.qiagenbioinformatics.com 01:33:04 <p>When it comes to taxonomic profiling of the microbiome, amplicon sequence variants (ASVs) is a method that has unique benefits compared to the traditional method of sequence similarity-based operational taxonomic unit (OTU) clustering. This training’ll cover how to effectively do taxonomic profiling using QIAGEN CLC Genomics Workbench’s ASV tools and a customizable workflow.<p></p> <p>Specifically, you’ll learn how to:<br> 1. Collect and bin sequence variants for each sample<br> 2. Merge AVS tables to compare profiles<br> 3. Assign the taxonomic profile/organism<br> 4. Export high-resolution graphical and comprehensive tabular results</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/88628295/metagenomics-and-taxonomic"><img src="http://tv.qiagenbioinformatics.com/64968575/88628295/d3fc0560880804b35be0c63cfd1ca5d3/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> microbial http://tv.qiagenbioinformatics.com/photo/87335372/metagenomics-taxonomic-profiling <p>QIAGEN CLC Microbial Genomics Module provides tools and workflows for many various bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.</p> <p>This training focuses on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering). Specifically, we’ll cover together:</p> <p>• An overview of the different tools within QIAGEN CLC Microbial Genomics Module and the research areas supported</p> <p>• Taxonomic profiling</p> <p>• Importing data</p> <p>• Utilization of metadata</p> <p>• Downloading and managing references</p> <p>• The OTU clustering workflow (analytical pipeline)</p> <p>• Downstream processing of abundance tables</p> <p>• Creating and exporting high-quality graphics</p><p><a href="http://tv.qiagenbioinformatics.com/photo/87335372/metagenomics-taxonomic-profiling"><img src="http://tv.qiagenbioinformatics.com/64968579/87335372/534b891ce8071a3caa19d8b9d09a6503/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/87335372 Fri, 28 Jul 2023 16:44:53 GMT Metagenomics taxonomic profiling using QIAGEN CLC Genomics Workbench QIAGEN CLC Microbial Genomics Module provides tools and workflows for many various bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes. This training focuses on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering). Specifically, we’ll cover together: • An overview of the different tools within QIAGEN CLC Microbial Genomics Module and the research areas supported • Taxonomic profiling • Importing data • Utilization of metadata • Downloading and managing references • The OTU clustering workflow (analytical pipeline) • Downstream processing of abundance tables • Creating and exporting high-quality graphics QIAGEN CLC Microbial Genomics Module provides tools and workflows for many various bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The... tv.qiagenbioinformatics.com 01:33:29 <p>QIAGEN CLC Microbial Genomics Module provides tools and workflows for many various bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.</p> <p>This training focuses on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering). Specifically, we’ll cover together:</p> <p>• An overview of the different tools within QIAGEN CLC Microbial Genomics Module and the research areas supported</p> <p>• Taxonomic profiling</p> <p>• Importing data</p> <p>• Utilization of metadata</p> <p>• Downloading and managing references</p> <p>• The OTU clustering workflow (analytical pipeline)</p> <p>• Downstream processing of abundance tables</p> <p>• Creating and exporting high-quality graphics</p><p><a href="http://tv.qiagenbioinformatics.com/photo/87335372/metagenomics-taxonomic-profiling"><img src="http://tv.qiagenbioinformatics.com/64968579/87335372/534b891ce8071a3caa19d8b9d09a6503/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> microbial http://tv.qiagenbioinformatics.com/photo/87171394/pathogen-detection-and-variant <p>The detection and surveillance of pathogens such as respiratory viruses, sexually transmitted pathogens, adventitious agents and antimicrobial-resistant bacteria are increasingly important in healthcare settings and environmental monitoring. The COVID-19 pandemic highlighted the importance of identifying and differentiating variants of concern. By applying the lessons learned from the COVID-19 pandemic to other pathogens of interest, it’s clear there’s a widespread need for the ability to target sensitive variants using next-generation sequencing (NGS) enrichment strategies and to analyze NGS data.</p> <p>In this training, we'll use QIAGEN CLC Genomics Workbench to analyze NGS data generated from hybrid capture technology. Using data generated from QIAGEN HYB panels, you'll learn how to import, analyze and interpret NGS data. Specifically, you’ll discover:<br /> 1. How to import NGS data into QIAGEN CLC Genomics Workbench<br /> 2. How to analyze the data using template workflows;<br /> 3. How to interpret the results using the interactive graphics produced by the workflows;<br /> 4. How to modify the template workflows to accommodate custom panels</p><p><a href="http://tv.qiagenbioinformatics.com/photo/87171394/pathogen-detection-and-variant"><img src="http://tv.qiagenbioinformatics.com/64968567/87171394/44b097d34c52195afb417008e7769dd2/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/87171394 Fri, 21 Jul 2023 14:59:07 GMT Pathogen detection and variant analysis using hybrid capture technology and... The detection and surveillance of pathogens such as respiratory viruses, sexually transmitted pathogens, adventitious agents and antimicrobial-resistant bacteria are increasingly important in healthcare settings and environmental monitoring. The COVID-19 pandemic highlighted the importance of identifying and differentiating variants of concern. By applying the lessons learned from the COVID-19 pandemic to other pathogens of interest, it’s clear there’s a widespread need for the ability to target sensitive variants using next-generation sequencing (NGS) enrichment strategies and to analyze NGS data. In this training, we'll use QIAGEN CLC Genomics Workbench to analyze NGS data generated from hybrid capture technology. Using data generated from QIAGEN HYB panels, you'll learn how to import, analyze and interpret NGS data. Specifically, you’ll discover: 1. How to import NGS data into QIAGEN CLC Genomics Workbench 2. How to analyze the data using template workflows; 3. How to interpret the results using the interactive graphics produced by the workflows; 4. How to modify the template workflows to accommodate custom panels The detection and surveillance of pathogens such as respiratory viruses, sexually transmitted pathogens, adventitious agents and antimicrobial-resistant bacteria are increasingly important in healthcare settings and environmental monitoring. The... tv.qiagenbioinformatics.com 01:19:48 <p>The detection and surveillance of pathogens such as respiratory viruses, sexually transmitted pathogens, adventitious agents and antimicrobial-resistant bacteria are increasingly important in healthcare settings and environmental monitoring. The COVID-19 pandemic highlighted the importance of identifying and differentiating variants of concern. By applying the lessons learned from the COVID-19 pandemic to other pathogens of interest, it’s clear there’s a widespread need for the ability to target sensitive variants using next-generation sequencing (NGS) enrichment strategies and to analyze NGS data.</p> <p>In this training, we'll use QIAGEN CLC Genomics Workbench to analyze NGS data generated from hybrid capture technology. Using data generated from QIAGEN HYB panels, you'll learn how to import, analyze and interpret NGS data. Specifically, you’ll discover:<br /> 1. How to import NGS data into QIAGEN CLC Genomics Workbench<br /> 2. How to analyze the data using template workflows;<br /> 3. How to interpret the results using the interactive graphics produced by the workflows;<br /> 4. How to modify the template workflows to accommodate custom panels</p><p><a href="http://tv.qiagenbioinformatics.com/photo/87171394/pathogen-detection-and-variant"><img src="http://tv.qiagenbioinformatics.com/64968567/87171394/44b097d34c52195afb417008e7769dd2/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> microbial pathogen detection http://tv.qiagenbioinformatics.com/photo/86678694/antimicrobial-resistance-amr-and <p>You asked for it by popular demand, and we’re here to deliver. In this training, we’ll cover how antimicrobial resistance (AMR) is used for isolation or can be easily integrated with other functionalities such as multi-locus sequence typing (MLST).<br /> In this training, we’ll cover:<br /> • Introduction to AMR, MLST and relevant databases<br /> • QIAGEN Microbial Insight - Antimicrobial Resistance database (QMI-AR)<br /> • Importing data and downloading needed databases<br /> • Finding resistance with nucleotide DB, PointFinder and ShortBRED<br /> • Integrating AMR with MLST<br /> • Exporting high-resolution graphics and result tables</p><p><a href="http://tv.qiagenbioinformatics.com/photo/86678694/antimicrobial-resistance-amr-and"><img src="http://tv.qiagenbioinformatics.com/64968579/86678694/1c00082b424b6831d89855a91b6c943b/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/86678694 Thu, 08 Jun 2023 18:33:00 GMT Antimicrobial resistance (AMR) and multi-locus sequence typing (MLST) using... You asked for it by popular demand, and we’re here to deliver. In this training, we’ll cover how antimicrobial resistance (AMR) is used for isolation or can be easily integrated with other functionalities such as multi-locus sequence typing (MLST). In this training, we’ll cover: • Introduction to AMR, MLST and relevant databases • QIAGEN Microbial Insight - Antimicrobial Resistance database (QMI-AR) • Importing data and downloading needed databases • Finding resistance with nucleotide DB, PointFinder and ShortBRED • Integrating AMR with MLST • Exporting high-resolution graphics and result tables You asked for it by popular demand, and we’re here to deliver. In this training, we’ll cover how antimicrobial resistance (AMR) is used for isolation or can be easily integrated with other functionalities such as multi-locus sequence typing... tv.qiagenbioinformatics.com 01:32:24 <p>You asked for it by popular demand, and we’re here to deliver. In this training, we’ll cover how antimicrobial resistance (AMR) is used for isolation or can be easily integrated with other functionalities such as multi-locus sequence typing (MLST).<br /> In this training, we’ll cover:<br /> • Introduction to AMR, MLST and relevant databases<br /> • QIAGEN Microbial Insight - Antimicrobial Resistance database (QMI-AR)<br /> • Importing data and downloading needed databases<br /> • Finding resistance with nucleotide DB, PointFinder and ShortBRED<br /> • Integrating AMR with MLST<br /> • Exporting high-resolution graphics and result tables</p><p><a href="http://tv.qiagenbioinformatics.com/photo/86678694/antimicrobial-resistance-amr-and"><img src="http://tv.qiagenbioinformatics.com/64968579/86678694/1c00082b424b6831d89855a91b6c943b/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> antimicrobial resistance microbial http://tv.qiagenbioinformatics.com/photo/85789799/transcriptional-response-to-animal <p>In recent years there has been a rapid trend to end use of antibiotic growth promoters (AGPs) in livestock feed. This has brought a new area in veterinary research and a surge of new products that claim that they can control pathogens to a similar level as AGPs. Several alternatives to AGPs have been successfully implemented on farms, including probiotics, prebiotics, symbiotics, organic acids, biochar, bentonite and many more. Plant-based antimicrobial products, referred to as phytogens, are surging in popularity and use. Although strongly antimicrobial, plant phytogens have a range of other beneficial effects, including insecticide, anti-cancer, immunomodulating, drug interference, altering hormone levels and many others known to the general public via the effects of plant essential oils.</p> <p>In this webinar, we'll explore:</p> <p>The results of a study on the effects of a phytogenic product containing menthol, carvacrol and carvone<br /> How this phytogenic product was supplemented to egg-laying birds from arrival to production sheds<br /> The effects on birds' productivity and welfare based on studying their 16S microbiota, metagenomics and ileum transcriptomics<br /> How QIAGEN CLC Genomics Workbench was applied to RNA-seq data analysis<br /> How QIAGEN Ingenuity Pathway Analysis (IPA) enabled mapping a range of additional benefits of the product, paving the way to farm-customised pathogen control</p> <p>Don’t miss this opportunity to learn from an expert in microbiology about a promising plant-based alternative to antibiotics in animal feed.</p><p><a href="http://tv.qiagenbioinformatics.com/photo/85789799/transcriptional-response-to-animal"><img src="http://tv.qiagenbioinformatics.com/64968571/85789799/5faab0bfb5228c21ee74871d255fb293/standard/download-6-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/85789799 Tue, 09 May 2023 19:13:55 GMT Transcriptional response to animal feed supplemented with plant-based... In recent years there has been a rapid trend to end use of antibiotic growth promoters (AGPs) in livestock feed. This has brought a new area in veterinary research and a surge of new products that claim that they can control pathogens to a similar level as AGPs. Several alternatives to AGPs have been successfully implemented on farms, including probiotics, prebiotics, symbiotics, organic acids, biochar, bentonite and many more. Plant-based antimicrobial products, referred to as phytogens, are surging in popularity and use. Although strongly antimicrobial, plant phytogens have a range of other beneficial effects, including insecticide, anti-cancer, immunomodulating, drug interference, altering hormone levels and many others known to the general public via the effects of plant essential oils. In this webinar, we'll explore: The results of a study on the effects of a phytogenic product containing menthol, carvacrol and carvone How this phytogenic product was supplemented to egg-laying birds from arrival to production sheds The effects on birds' productivity and welfare based on studying their 16S microbiota, metagenomics and ileum transcriptomics How QIAGEN CLC Genomics Workbench was applied to RNA-seq data analysis How QIAGEN Ingenuity Pathway Analysis (IPA) enabled mapping a range of additional benefits of the product, paving the way to farm-customised pathogen control Don’t miss this opportunity to learn from an expert in microbiology about a promising plant-based alternative to antibiotics in animal feed. In recent years there has been a rapid trend to end use of antibiotic growth promoters (AGPs) in livestock feed. This has brought a new area in veterinary research and a surge of new products that claim that they can control pathogens to a similar... tv.qiagenbioinformatics.com 59:33 <p>In recent years there has been a rapid trend to end use of antibiotic growth promoters (AGPs) in livestock feed. This has brought a new area in veterinary research and a surge of new products that claim that they can control pathogens to a similar level as AGPs. Several alternatives to AGPs have been successfully implemented on farms, including probiotics, prebiotics, symbiotics, organic acids, biochar, bentonite and many more. Plant-based antimicrobial products, referred to as phytogens, are surging in popularity and use. Although strongly antimicrobial, plant phytogens have a range of other beneficial effects, including insecticide, anti-cancer, immunomodulating, drug interference, altering hormone levels and many others known to the general public via the effects of plant essential oils.</p> <p>In this webinar, we'll explore:</p> <p>The results of a study on the effects of a phytogenic product containing menthol, carvacrol and carvone<br /> How this phytogenic product was supplemented to egg-laying birds from arrival to production sheds<br /> The effects on birds' productivity and welfare based on studying their 16S microbiota, metagenomics and ileum transcriptomics<br /> How QIAGEN CLC Genomics Workbench was applied to RNA-seq data analysis<br /> How QIAGEN Ingenuity Pathway Analysis (IPA) enabled mapping a range of additional benefits of the product, paving the way to farm-customised pathogen control</p> <p>Don’t miss this opportunity to learn from an expert in microbiology about a promising plant-based alternative to antibiotics in animal feed.</p><p><a href="http://tv.qiagenbioinformatics.com/photo/85789799/transcriptional-response-to-animal"><img src="http://tv.qiagenbioinformatics.com/64968571/85789799/5faab0bfb5228c21ee74871d255fb293/standard/download-6-thumbnail.jpg" width="75" height=""/></a></p> microbial http://tv.qiagenbioinformatics.com/photo/85393870/pathogen-detection-in-wastewater <p>In this 90-minute training, you will learn how to easily analyze wastewater samples to detect pathogens (SARS-COV2, etc.) using QIAGEN CLC Genomics Workbench software.</p> <p>You will learn how to:<br /> • Importing reads<br /> • Open and modify prebuilt workflow (analysis pipeline)<br /> • Install and execute workflow<br /> • Review QC reports<br /> • Perform genome visualization<br /> • Export the consensus sequence in FASTA format to upload to Pangolin<br /> • Create a SNP tree of the consensus sequence and overlay Pangolin information<br /> • Export graphical and tabular results</p><p><a href="http://tv.qiagenbioinformatics.com/photo/85393870/pathogen-detection-in-wastewater"><img src="http://tv.qiagenbioinformatics.com/64968579/85393870/d60259d687e33ac3d63da0530e16b0b8/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/85393870 Mon, 24 Apr 2023 18:22:10 GMT Pathogen detection in wastewater samples using QIAGEN CLC Genomics Workbench In this 90-minute training, you will learn how to easily analyze wastewater samples to detect pathogens (SARS-COV2, etc.) using QIAGEN CLC Genomics Workbench software. You will learn how to: • Importing reads • Open and modify prebuilt workflow (analysis pipeline) • Install and execute workflow • Review QC reports • Perform genome visualization • Export the consensus sequence in FASTA format to upload to Pangolin • Create a SNP tree of the consensus sequence and overlay Pangolin information • Export graphical and tabular results In this 90-minute training, you will learn how to easily analyze wastewater samples to detect pathogens (SARS-COV2, etc.) using QIAGEN CLC Genomics Workbench software. You will learn how to: • Importing reads • Open and modify prebuilt workflow... tv.qiagenbioinformatics.com 01:26:28 <p>In this 90-minute training, you will learn how to easily analyze wastewater samples to detect pathogens (SARS-COV2, etc.) using QIAGEN CLC Genomics Workbench software.</p> <p>You will learn how to:<br /> • Importing reads<br /> • Open and modify prebuilt workflow (analysis pipeline)<br /> • Install and execute workflow<br /> • Review QC reports<br /> • Perform genome visualization<br /> • Export the consensus sequence in FASTA format to upload to Pangolin<br /> • Create a SNP tree of the consensus sequence and overlay Pangolin information<br /> • Export graphical and tabular results</p><p><a href="http://tv.qiagenbioinformatics.com/photo/85393870/pathogen-detection-in-wastewater"><img src="http://tv.qiagenbioinformatics.com/64968579/85393870/d60259d687e33ac3d63da0530e16b0b8/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench microbial http://tv.qiagenbioinformatics.com/photo/82862240/16s18sits-sequencing-analysis-using <p>QIAGEN CLC Microbial Genomics Module provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.</p> <p>This training will be focused on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering). The trainer will cover:</p> <p>· Overview of different tools within QIAGEN CLC Microbial Genomics Module and research areas supported</p> <p>· For taxonomic profiling</p> <p>o Importing data</p> <p>o Utilization of metadata</p> <p>o Downloading and managing references</p> <p>o Walk through of OTU clustering workflow (analytical pipeline)</p> <p>o Downstream processing of abundance tables</p> <p>o Creating and exporting high-quality graphics</p><p><a href="http://tv.qiagenbioinformatics.com/photo/82862240/16s18sits-sequencing-analysis-using"><img src="http://tv.qiagenbioinformatics.com/64968570/82862240/9f4d02a1fda061009d8d7f6b7f546f09/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/82862240 Wed, 25 Jan 2023 17:30:08 GMT 16S/18S/ITS sequencing analysis using CLC Genomics Workbench QIAGEN CLC Microbial Genomics Module provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes. This training will be focused on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering). The trainer will cover: · Overview of different tools within QIAGEN CLC Microbial Genomics Module and research areas supported · For taxonomic profiling o Importing data o Utilization of metadata o Downloading and managing references o Walk through of OTU clustering workflow (analytical pipeline) o Downstream processing of abundance tables o Creating and exporting high-quality graphics QIAGEN CLC Microbial Genomics Module provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The... tv.qiagenbioinformatics.com 01:19:23 <p>QIAGEN CLC Microbial Genomics Module provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization. The module supports the analysis of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.</p> <p>This training will be focused on amplicon-based taxonomic profiling (16S/18S/ITS sequencing OTU clustering). The trainer will cover:</p> <p>· Overview of different tools within QIAGEN CLC Microbial Genomics Module and research areas supported</p> <p>· For taxonomic profiling</p> <p>o Importing data</p> <p>o Utilization of metadata</p> <p>o Downloading and managing references</p> <p>o Walk through of OTU clustering workflow (analytical pipeline)</p> <p>o Downstream processing of abundance tables</p> <p>o Creating and exporting high-quality graphics</p><p><a href="http://tv.qiagenbioinformatics.com/photo/82862240/16s18sits-sequencing-analysis-using"><img src="http://tv.qiagenbioinformatics.com/64968570/82862240/9f4d02a1fda061009d8d7f6b7f546f09/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench microbial http://tv.qiagenbioinformatics.com/photo/75002110/identifying-antimicrobial <p>Antimicrobial resistance (AMR) detection and surveillance is a high priority in healthcare and environmental settings for the safety of both patients and the general public. However, working with samples used for this type of monitoring, such as stool or wastewater, can be challenging, from the sample preparation to the sequencing to the bioinformatics. <p>In this 60-minute online summit, we will take you through a series of biological samples, including stool, wastewater and others. We'll demonstrate the workflows and characteristics of each, together with the answers and insights you can expect. There will also be a live Q&amp;A session, giving you a chance to discuss your questions and use cases with our experts.</p> <p>At this online virtual AMR summit, you will learn about:</p> <p>Our kits for nucleic acid extraction from various sample types such as stool, sludge and wastewater<br> The importance of inhibitor removal during sample preparation<br> Sequencing workflows for AMR<br> Benefits of using hybrid capture versus shotgun sequencing<br> How to generate ShortBRED AMR marker abundance tables<br> How to associate and compare different metadata, such as sample type (stool, wastewater, etc.)<br> AMR alpha and beta diversity across sample types and how to determine the depth of coverage</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/75002110/identifying-antimicrobial"><img src="http://tv.qiagenbioinformatics.com/64968566/75002110/c844027d50e12974c906a04abd9266a1/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/75002110 Thu, 07 Apr 2022 18:26:52 GMT Identifying antimicrobial resistance from Sample to Insight Antimicrobial resistance (AMR) detection and surveillance is a high priority in healthcare and environmental settings for the safety of both patients and the general public. However, working with samples used for this type of monitoring, such as stool or wastewater, can be challenging, from the sample preparation to the sequencing to the bioinformatics. In this 60-minute online summit, we will take you through a series of biological samples, including stool, wastewater and others. We'll demonstrate the workflows and characteristics of each, together with the answers and insights you can expect. There will also be a live QA session, giving you a chance to discuss your questions and use cases with our experts. At this online virtual AMR summit, you will learn about: Our kits for nucleic acid extraction from various sample types such as stool, sludge and wastewater The importance of inhibitor removal during sample preparation Sequencing workflows for AMR Benefits of using hybrid capture versus shotgun sequencing How to generate ShortBRED AMR marker abundance tables How to associate and compare different metadata, such as sample type (stool, wastewater, etc.) AMR alpha and beta diversity across sample types and how to determine the depth of coverage Antimicrobial resistance (AMR) detection and surveillance is a high priority in healthcare and environmental settings for the safety of both patients and the general public. However, working with samples used for this type of monitoring, such as... tv.qiagenbioinformatics.com 59:17 <p>Antimicrobial resistance (AMR) detection and surveillance is a high priority in healthcare and environmental settings for the safety of both patients and the general public. However, working with samples used for this type of monitoring, such as stool or wastewater, can be challenging, from the sample preparation to the sequencing to the bioinformatics. <p>In this 60-minute online summit, we will take you through a series of biological samples, including stool, wastewater and others. We'll demonstrate the workflows and characteristics of each, together with the answers and insights you can expect. There will also be a live Q&amp;A session, giving you a chance to discuss your questions and use cases with our experts.</p> <p>At this online virtual AMR summit, you will learn about:</p> <p>Our kits for nucleic acid extraction from various sample types such as stool, sludge and wastewater<br> The importance of inhibitor removal during sample preparation<br> Sequencing workflows for AMR<br> Benefits of using hybrid capture versus shotgun sequencing<br> How to generate ShortBRED AMR marker abundance tables<br> How to associate and compare different metadata, such as sample type (stool, wastewater, etc.)<br> AMR alpha and beta diversity across sample types and how to determine the depth of coverage</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/75002110/identifying-antimicrobial"><img src="http://tv.qiagenbioinformatics.com/64968566/75002110/c844027d50e12974c906a04abd9266a1/standard/download-7-thumbnail.jpg" width="75" height=""/></a></p> FAS Training microbial