| Videos | Channels | Search |
Public single cell RNA-seq data investigation using Omicsoft and Ingenuity Pathway Analysis
Slides from this training:
https://qiagen.showpad.com/share/qm9IZA718x6x5h6pfsiTa
Single cell lands tutorials: https://omicsoftdocs.github.io/ArraySuiteDoc/tutorials/SingleCellLand/Gene_Views/
Single cell RNA-sequencing (scRNA-seq) has been widely used to investigate tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, development of targeted therapy (including immunotherapy) and more. Accordingly tremendous amount of scRNA-seq data has been deposited to public domains like GEO.
In this training, attendees will learn how to
· Locate public single cell studies of their interest using Omicsoft Single Cell Lands
· Study different cell types by dimension reduction plots (example t-SNE, UMAP)
· Investigate expression of genes of interest across different cell types (Violin plots, overlay expression on cluster)
· Identify key pathways and regulators from scRNA-seq data using Ingenuity Pathway Analysis
01:46:03 minutes
Tags: FAS Training, omicsoft webinar, single-cell