| Videos | Channels | Search |
Isolate Typing, Strain Identification and Antimicrobial Resistance Analyses Using CLC Genomics Workbench
QIAGEN CLC Genomics Workbench provides tools and workflows for a broad range of bioinformatics applications, including microbiome analysis, isolate characterization through SNP and K-mer trees using NGS data, and antimicrobial resistance characterization. CLC Genomics Workbench is widely used for analyses of bacterial, viral and eukaryotic (fungal) genomes and metagenomes.
Topics covered in this webinar include:
I. Overview of different tools within MGM application and research areas supported
II. II. Focused review of isolate typing and characterization
III. a. How to import data
IV. b. Using metadata
V. c. Downloading and managing references, including databases of isolates/resistances/MLST
VI. d. Walkthrough of the "Type a Known Species" workflow and review of details for each isolate
VII. e. Creating SNP profiles to specific reference
VIII. f. Generate a SNP tree for isolate comparison
IX. g. Export tabular and high-quality graphical outputs in wide range of file formats
01:27:26 minutes